PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0069s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 302aa    MW: 33115.4 Da    PI: 6.5854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0069s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06120142123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg+ F r  nL+ H r H
  Mapoly0069s0060.1.p 120 FTCEVCGRGFQREQNLQLHKRGH 142
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.16E-6120142No hitNo description
SMARTSM003550.0038120142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5120142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355200163193IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.16E-6193218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLGEVESVTD KMASSSCTSP SVNEPMSGTE PTSADSVSEE ELSLDVKPII VETTQAPSCT  60
ELVSVQLPAI NTTTTSATLN VQNNEKQQGV KRKRNLPGTP DPDAEVVALS PKTLMATHKF  120
TCEVCGRGFQ REQNLQLHKR GHNLPGSLKP RANKDKEIRK KVYVCPEPTC VHHDPARALG  180
DLTGIKKHFC RKHGEKKWKC DKCCKKYAVL SDWKAHSKTC GTRDYKCECG SIFYRRDSFV  240
THKAFCDELA EESARLAAGS SEPPAPVLLL DAMPPEDKDE PVSYRQLLGE DDIDDNDQAG  300
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001760619.11e-102predicted protein, partial
RefseqXP_006838942.11e-102PREDICTED: protein indeterminate-domain 12
SwissprotQ944L31e-101IDD9_ARATH; Protein indeterminate-domain 9
SwissprotQ9ZWA61e-101IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLB8LP081e-103B8LP08_PICSI; Putative uncharacterized protein
STRINGPP1S43_228V6.11e-101(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-93C2H2 family protein